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Friday, February 15, 2019

Install , test and fix error of the jupyter-book into python 3.

Jupyter Books lets you build an online book using a collection of Jupyter Notebooks and Markdown files. Its output is similar to the excellent Bookdown tool, and adds extra functionality for people running a Jupyter stack.
Read more about this on the official webpage.
Today I start to test this python module named jupyter-book.
I find some errors and I fixed to running well a demo jupyter-book instance.

C:\Python364\Scripts>pip install jupyter-book
Collecting jupyter-book
...
Installing collected packages: ruamel.yaml, jupyter-book
Successfully installed jupyter-book-0.4.1 ruamel.yaml-0.15.88
First I try to create a jupyter-book named catafest but I got this error:
C:\Python364>jupyter-book create catafest --demo
Traceback (most recent call last):
...
from nbclean import NotebookCleaner
ModuleNotFoundError: No module named 'nbclean'
The next step was to fix the error by install the nbclean python module and see all dependencies of python modules:
C:\Python364\Scripts>pip3.6.exe install nbclean
Collecting nbclean
...
Collecting nbgrader (from nbclean)
...
Collecting sqlalchemy (from nbgrader->nbclean)
...
Collecting alembic (from nbgrader->nbclean)
...
Collecting ipython<=6.2.1 (from nbgrader->nbclean)
...
Collecting jupyter-console<=5.2.0 (from nbgrader->nbclean)
...
Collecting Mako (from alembic->nbgrader->nbclean)
...
Collecting prompt-toolkit<2 .0.0="">=1.0.4 (from ipython<=6.2.1->nbgrader->nbclean)
...
Collecting prompt-toolkit<2 .0.0="">=1.0.4 (from ipython<=6.2.1->nbgrader->nbclean)
...
Building wheels for collected packages: nbgrader, sqlalchemy, alembic, Mako
...
Successfully built nbgrader sqlalchemy alembic Mako
Installing collected packages: sqlalchemy, Mako, python-editor, alembic, prompt-toolkit, ipython, 
jupyter-console, nbgrader, nbclean
...
Successfully installed Mako-1.0.7 alembic-1.0.7 ipython-6.2.1 jupyter-console-5.2.0 nbclean-0.3.2 
nbgrader-0.5.5 prompt-toolkit-1.0.15 python-editor-1.0.4 sqlalchemy-1.2.17 
Using again the jupyter-book to create catafest I got another error:
C:\Python364>jupyter-book create catafest--demo
Copying new book to: .\catafest
Copying over demo repository content
This is an error when I start to buid first time:
C:\Python364>jupyter-book build catafest
Convert and copy notebook/md files...
  0%|                                                                       | 0/35 [00:00
  File "c:\python364\lib\site-packages\jupyter_book\main.py", line 31, in main
    commands[args.command]()
  File "c:\python364\lib\site-packages\jupyter_book\build.py", line 266, in build_book
    lines = ff.readlines()
  File "c:\python364\lib\encodings\cp1252.py", line 23, in decode
    return codecs.charmap_decode(input,self.errors,decoding_table)[0]
UnicodeDecodeError: 'charmap' codec can't decode byte 0x9d in position 183: character maps to  
The reason is the python 3.x and can be fixed by change the encoding into this file:
c:\python364\lib\site-packages\jupyter_book\build.py with this:
with open(path_new_file, 'r',encoding='utf-8') as ff:
The next step is to build the catafest jupyter-book:
C:\Python364>jupyter-book build catafest
Convert and copy notebook/md files...
... 
My GitHub account is catafest and I used this link to create a new repo named catafest_jupyter-book:
https://github.com/new
You need to use root folder use this commands:
C:\Python364\catafest>cd ..

C:\Python364>git clone https://github.com/catafest/catafest_jupyter-book
Cloning into 'catafest_jupyter-book'...
warning: You appear to have cloned an empty repository.
Copy all files and folders from catafest folder to catafest_jupyter-book folder and use GITHUB commands to upload to the web:
C:\Python364>cd catafest_jupyter-book

C:\Python364\catafest_jupyter-book>git add ./*

C:\Python364\catafest_jupyter-book>git commit -m "adding my first jupyter book!"

C:\Python364\catafest_jupyter-book>git push
Username for 'https://github.com': catafest
Password for 'https://catafest@github.com':
Enumerating objects: 347, done.
Counting objects: 100% (347/347), done.
Delta compression using up to 2 threads.
Compressing objects: 100% (304/304), done.
Writing objects: 100% (347/347), 1.40 MiB | 541.00 KiB/s, done.
Total 347 (delta 74), reused 0 (delta 0)
remote: Resolving deltas: 100% (74/74), done.
To https://github.com/catafest/catafest_jupyter-book
 * [new branch]      master -> master
You can make GITHUB settings with a new gh-pages branch to see into your browser.